Analyze sequence

Copy and Paste your sequence

Select Organism Window Size(default - 120 bases)


This is a program based on fickett statistics and loglikelihood statistics
on nucleotide sequences. Currently there are codon preference table created
for 4 common oomycetes and Soybean. On request we can create codon usage
tables for more organisms. It takes the nucleotide sequence as query, checks
the fickett and log likelihood scores of the sequence and plots. If the
fickett score is consistently higher than 1, then the sequence is most likely
a coding. This is also true for loglikelihood (scores higher than 1 indicates coding).