Transcript Name :
Phyra_g181
Location :
Scaffold_1 : 577603 - 580192
Orientation:
(+)
Number of Exons:
3
Description :
OWZ24106.1 RxLR effector protein [Phytophthora megakarya
This protein is Not Signal Peptide
This protein has transmembrane domain
Not Reviewed
Run NCBI BLAST with nr Database
Analysis
Gene Model plot
Functional Annotation
HMMPFAM Prediction
*** None ***
SUPER FAMILY Prediction
*** None ***
FPRINTSCAN Prediction
*** None ***
PROFILESCAN Prediction
Profile scan predictionP-Valprediction_id
Ubiquitin domain20.697PS50053
HMMSMART Prediction
HmmSmart predictionP-Valprediction_id
Ubiquitin domain8.8e-21SM00213
HMMTigr Prediction
*** None ***
HMMPanther Prediction
*** None ***
Gene3D Prediction
*** None ***
InterPro
*** None ***
Signalp -- Signal Peptide cleavage Site
*** None ***
tmhmm -- Prediction of transmembrane helices in Proteins
InsideOutsideTMhelix
1-691
SECRETOME -- Non-signal Peptide Protein Secretion
*** None ***
PROP -- Proprotein Convertase Prediction using PROP
PositionContextScore
173SRSRQRR|TA0.732
284RHHRRNR|DG0.543
297GRQRHGR|RS0.507
PSORT -- Prediction of sub-cellular localization
*** None ***
GO
Biological ProcessGO IDPrediction Method
protein bindingGO:0005515IEA
Pathway
*** None ***
Ortholog
*** None ***
Sequence
        2589 bases(100 bases per row)
ATGGCCACGCCGACCGACCCGCTGTCGGAGCCTGCGGCCGAGCCTCCTGTGGCCGCAGAGGCCGCGCGACTATCGCTCAAGGTGCGCACACTGGATCAGA
AGACGTACCCGATCACCATCTGCGCGGCCGCCTCTGTGCCGCAGCTCAAGGAGGTCGTGGCCGCCGAGACGGGCATCACACTGGCCCGCCAGAGACTCAT
TTACCGTGGCCGAGTGCTCAAGAACGACCAGTCGCTGGCTGCGTACTCGCTGGAGGATGGCCACGTGCTGCACTTGGTGGTGCGTGCCGCTCCGCTGCCG
TCTGCTGGCGTTGCTGCTGCCGGCCACGGATCGGCCGATTCTTCTGCTCCGGACGCTGATGCTGGCCAGGCTGGGCGAGCCTCTGACCACACTGCTGCTG
CACACCAGTACTTGGCTACAGGATTCAGCTCAATGAACGGCATGGACGCGCTGAATGCGCGGCTGGACGAGTTGCAGAGACTGTCTCAACGCGCGCGGTC
GAGATCGCGTCAACGTCGAACAGCTCGTATGCCGCTGCCGCCGACAGATAATGATGAACCTGACCCGACCATGGGACGCCCGGGCGGTGGAATCCCCAGC
CGCGTGCTCATGGGCGCTACCATTTCGGTGCCTGAAGGGGCCAATGTTACCATGCCCTTCCTCAGCTCCATGATCGCCAACCTTGTCACGCAGGTTCATG
AAGGTGGCGTGGAAGGCGAAGGAGTGACGACAGGAACCGCTGCAGATGGACGACATCATGTGTCGTTCTCGAGTGAGGCCCTGGGTGGGGTCGCTGCTGC
TGAAATGGGAGCGACCGCGGCGAGAGCGCTGCGCCACCACCGCCGGAATCGCGATGGATCGGGTAGTACGGGACGTCAACGCCATGGGCGACGTTCTTTT
ACTGGTGCTGGGCGTCAGGAAGCTTTGCGAGTTCGTACGGGTGTACTGTTCGCGTCGATGCGTGCGACGCTGGATGACGCGTCTCTCAATTTCCCAGCCG
AGCTCGCCGCACTGCCGCAAGGAGGGGACAATGCAGCTATGGCAGAACTGCAGCAGCAAGTGGAAATGCTGCTAACGCTGCTGGAGCGGTTTGGGCCACG
ACTTCGCCTTCTTCCTGCTGCGCTTGCCCAGCGAGACCGTCTGACTGAGCGCTCTGCTCTAGCGGCTAGTGGTACGGCGCCAGTTGAGTCAGCTTCAGGC
AGCAGTAGCACACCCAACACGACCAATGACCCAGCAGAGCCAACAGTATCAACACGCCATGTGATTCGTGCGATCGAGACGCTGCAATCGATCGGAGAGG
CCACTGACTTGCTGGCGCGCATGGTGCGCCATGCGTTTGTTCACCAACCCATACAGTTGCGCGAACCCATTCCGTTCCGTGAAGATGCTGCCGGTGCTGC
GAATTTAGGTGCTACTATTGCTGGTGACGGAGTAGATGCCGCGATGCAAGCAGCGAGTCGCACTGCAGGTGCTCACGCTACTACTGGTGACAGAGTGATT
GCTGCGATGCATGCAGCTGCACGAAGCGAAGGAGGTGTTCGACCTCGGTTTCGAGTGTCTCGAGTCAGGGCTATGGATCTGCTGGGCGAACGAACTATTA
CAGCGTCGAGAACGGGCAACACTGCTCCAGGATCGACCCCAGGCTTCCCAGTAGATCTAACGGGCTCTTCTACTCGTGCAGCGCCACCGGTGCCCCAGTT
GGCAACTTCCGCAGATAGCAGTCGACCAAACACGCGAGCTGATGCAGCTCCAAACAATAGTATGGATCCTCAACTGCCTGCAGGTGCGCGCATCTCGATT
CCGGGCATCGGTGGACTGCCTCTCATGTCTTCGGTAGTGTTCCCATACTCTCTGGCAGCCGGCCTAGGCGGTAGCCATGCTACTACGACCTGGAACCTGG
CGGATTTTGTAAGCCGGCTAACCAGTGAGCTGCCAATTTCCACTATCTACGGAGTCATGGCGGGTGATGCCACCCATCTACACCAGATCATGGCGCACAT
TGGCTTCGCTTTGTTCAGCGGCGTTGACGTTCCGCGGATATCAAGACCGAACCTTCGTGCTTGGGCCCAAGACCTTGTAGACGAACTCCGCCGTTTGTTG
CGCTCGAATGCGCTGCCTGCAGACGTGCTGGATCAAGTGAATGGAGAGACTGAGCGACGCTCAGCGCTGGGGAACGAGCTTCTTCGTGTTATGGAGCCGT
TTATCCCTGACCTCATCGACTACCTCGTCCGTGCCACGTCAGCTAGTCGGGTCGCTGCATTTGGAACCAGCAGCTCAACATTTTTGCGTACAATGGTCCG
GCAAGTTGTCCACCAACTCCGTTCCTACGCAAGAGACTCGACAGAATCCGAAGACGAGAGCGACGAGCGATTGAAGCGTCTGCTGCGAGGACTACTAATC
TGGTTCGGCATGAACGAGCACATGGCGGGCTTTGTCGTTGACAGTCTTCTATGCTGGACTGAAGGAGATGGCGCTTCAAGTCGTCGCGGACGTACGCGCC
AACGCGAGGACGCTACTAGCGGAGCTGGTGCTACTGACTCGTCTGCAACCAAGCGGCGACGTGAGTAAGACGTCAAAGGAGCTGCTGTA