/usr/amritdata/protein/develop/executables/log_for_browse/loglikelihood -s /tmp/images/bd_sequence_input_file_e257cfaabd6beaa3996e6dbc5fd78e45 -m /usr/amritdata/protein/develop/executables/log_for_browse/matrix/112090 -w 120 -web -o /tmp/images/bd_log_output_file_e257cfaabd6beaa3996e6dbc5fd78e45
Transcript Name :
Aphas_H257_00036
Location :
Scaffold_1 : 87272 - 89742
Orientation:
(+)
Number of Exons:
5
Description :
Amino AcidPolyamineOrganocation (APC) Family putati
This protein is Not Signal Peptide
This protein has transmembrane domain
Not Reviewed
Run NCBI BLAST with nr Database
Analysis
Gene Model plot
Functional Annotation
HMMPFAM Prediction
*** None ***
SUPER FAMILY Prediction
*** None ***
FPRINTSCAN Prediction
*** None ***
PROFILESCAN Prediction
*** None ***
HMMSMART Prediction
*** None ***
HMMTigr Prediction
*** None ***
HMMPanther Prediction
*** None ***
Gene3D Prediction
*** None ***
InterPro
*** None ***
Signalp -- Signal Peptide cleavage Site
*** None ***
tmhmm -- Prediction of transmembrane helices in Proteins
InsideOutsideTMhelix
1-56
117-120
178-178
239-249
310-349
434-468
80-93
141-154
202-215
273-286
373-410
57-79
94-116
121-140
155-177
179-201
216-238
250-272
287-309
350-372
411-433
SECRETOME -- Non-signal Peptide Protein Secretion
*** None ***
PROP -- Proprotein Convertase Prediction using PROP
*** None ***
PSORT -- Prediction of sub-cellular localization
*** None ***
GO
*** None ***
Pathway
*** None ***
Ortholog
*** None ***
Sequence
        2471 bases(100 bases per row)
CTTCGATCGCGATAGGGGTGCTCATATCGAAGTTGGCGCCAAACTTCGACTTGTCTGGTTTTGCCACGGCGAGTTGTGGATTGATTCTACGTTGATCTTT
GGTCGCTGCTTGCTGCTCTGTTGACTGCGCGCCGCCACCGCCGCCGTAGCCTACAACACAGGTCGATCCCATCCCACGTCTGTACGTCATTCAGCCCTTA
CGTTCATGGCCGATACTGCTACGTCTCGTGAACGCGAGCCCATCCTGAAGCGGCCTCGGAAGCCGTCGATCGGTCGTCGACAGCTGGGCGTGCTGCCGGT
AGCGATGATCACGTACTTTAACGTGAGTGGGGGACCATGGGGAAGTGAACCGATCATCTCGTCATGCGGCCCGTTGATCGGCATCCTTGCCGTGTCCATC
TTTCCCTGGATCTGGTGCCTACCCACCGCGCTTTTGTTTGCCGAACTCTTTAGCGCGTTCCCGACCGACAGCAGCTTTTGCACATGGGTAGGACTAGCGT
TCGGTCGCCCCATGGGGTTCCACGTCGGCTACTGGTCCTGGGTCGGCGGGGTCATCGACAACGCCATCTATCCTTGCTTGATCGTCGACTCGATCATCTC
CATCACGTCCGGCGGCATCCTGGGCGTACAAGACATCAGCAACGAAAACACAGCGTTCGGGGTCAAATTCGCGGCTCGCGTCAGCATCGCCATTCTCTTC
ATGGTGCCCACGCTCTTCAGCATCAAGATCGTGGGCCGCACGATGCTCGTGCTGGCCATCATCGTCGCCATGCCGTTCGTGGTCCTGGTCGTCGTGGCCA
TCCCTCAAGTGAATCCGTCCAACTGGCTCGTCGTCAGCGAAGACGTACGTGTGTGAAAATATATATCGTATACACTTGGTACATAATTCCAATATCTGTT
GTTATTGGAATGTAGCGCAACTGGGTCAACTTGATCAGCGTCTTGTACTGGAACTACAGCGGGTTCGACGCCGCTGGCGCCTACGCGGGTGAAATCGTCG
ACCCGAAGCGGACGTATCCCCGCGCGATGGTGCTCACGGTGATCCTCATTGCCCTCACGTACGTACGCTAATGTGGTTGATCTTAATAGGTTCCTCCTAT
TCTGGTTGGACTTGTGTGTACTGCTTGATATTCGCCAAATACATGGATCGATTGTTTGTACGATGTGCAAGGGTATCCTATGTGGATACATTCACATTTG
AAGAATATGAACTACAGTTTTAACTGGTACTGGGCCAAAACCCAATACGAATCGACGATTGGTTGAAATTTCTCGTCTTCTTGAAGTTTGATTGGCTAGA
ACATCCTCTACATACATTTATCCACTTTATTCCAATTCTACGCAAAGTCCCCCATATGGGAAAAACGGAGTTTCGTTGTTTGTTCTCCATTTATTTTAGA
CGTAATCTGTATTGTGGATTCGGTCGGTACGAAATTCCAGACCCCGTCGAGTATCTCACCGCCGATCGAATCACGAATCGACGCTATTGGCTAATCCTTT
TTTGAGTGGATTTGATTGGCTCGAAAGGATAAGTATATTCAACCAATCAGCACTCCGGCGTGATTCAATATTGAGTAGACAAACCAGGCGAATGTTGAAT
TCACAATATGTGTGTAGGTACTTGATCCCGTTTGTGGCCATCACGGGCGTGGACAAGCCCCACTATGCGACATGGGTCGATGGATCGTACACGTCGATTG
CGCTGGGCGTGGGCGGCATGTGGCTGTGTGGGTGGGTGGTCGTGTCCAACTTCTTTGGCAACTTGGGGCTTTACATGGCCGAAATGACCAAAGATGGCTT
CCAACTGGCGGGGATGGCCGACTCGGGCCTGGCGCCGTCGTTCTTTGCCGTGTACGACCATCACACATATATTGTTCATCACCTATTGAACAATCACCCA
TATATATATATATTGTATGGGAGGTGTGACTGTATATATATTGACATTGTAGCCGCGACACGAGCTCGGGCACGCCGCGCCGGTCGATTTTCTTGTCGTT
TGCGATCATCGTGTTTATGTGCTTGTTTGATTTCGACACGATTTTGGGCGTCGACAACTTTTGCTCGGCGCTGTCGAGTGTCGTGGAGATCTGCGCCGCG
GTCCGCCTGCGCTACACGCACCCTGAAATCGACCGTCCTTATAAAGGTACATTTCATATATATATATATATATATATATACATTGTGGTGATAATGGTTT
TATTTTAGTCGGCCTCTCGGATGCACGGCTGACGGTTGCGATGGTCGTGCCGTTTGTCGTGGGTGTGTACATTGTCGGCAACGAGCTCCTGATCAACACG
ACCACGATGGTGCTGTGCTCGGTCACGGTCGTGGCGGGCGTGGTGCTCCAGAGGTGCTGCCTGGACGGAGTCGGTGGCAGCACCAACTGCTTCTTGTCCG
TCTAACCAATATGAAGGGTAGCGTCTATTAACACGATAATTCTTAACAACCAAGGGATTTCAGTTGTCATA