Transcript Name :
Aphas_H257_00019
Orientation:
(+)
Number of Exons:
13
Description :
JARID1A protein
This protein is Not Signal Peptide
This protein has transmembrane domain
Not Reviewed
Run NCBI BLAST with nr Database
Gene Model plot
Functional Annotation
*** None ***
*** None ***
*** None ***
Profile scan predictionP-Valprediction_id
Transcription factor jumonji, JmjN15.823PS51183
ARID/BRIGHT DNA-binding domain21.231PS51011
Zinc finger, PHD-finger9.49PS50016
JmjC domain39.064PS51184
Zinc finger, PHD-finger8.894PS50016
HmmSmart predictionP-Valprediction_id
Transcription factor jumonji, JmjN2.2SM00545
Zinc finger, PHD-finger1.7SM01014
ARID/BRIGHT DNA-binding domain2.4SM00501
AT hook, DNA-binding motif0.34SM00384
AT hook, DNA-binding motif0.14SM00384
Zinc finger, PHD-type4.3SM00249
JmjC domain1.9SM00558
Zinc finger, PHD-type1.7SM00249
Zinc finger, PHD-type1.9SM00249
*** None ***
*** None ***
*** None ***
Interpro Domain nameprediction_id
Transcription factor jumonji, JmjNIPR003349
*** None ***
InsideOutsideTMhelix
1-1625
*** None ***
*** None ***
*** None ***
GO
Biological ProcessGO IDPrediction Method
protein bindingGO:0005515IEA
DNA bindingGO:0003677IEA
zinc ion bindingGO:0008270IEA
intracellularGO:0005622IEA
*** None ***
*** None ***
Sequence
        6826 bases(100 bases per row)
CACAAAGCGAAAACGCTGGTGGCACTGCTGGTCGCGGACTTGTCGACGAATTGTACCGAGCGCTACAAGCATAAGAAGCCCCAGGAACAAATCCCACGTC
GCTCCATCCATCTCAACGCAGTCCACCCACGCCGCACCCCATGGACGCCATGTCAGATTACGAAAAAATGGCGCGGCAGGCGGCGGAAGATGGGTATGTT
TGCCCGCCCTGCAAAACCTTTTACCCTACCCCGGACGAGTTTTTAAACCCACTGCAGTACATCGCCAGGTATACAAACGTGCTATTTCGAGTGCCAAGTG
AAACCTGTCATATTTAATATTTACCTTCCTACGGTAGTATCCGCGCGGAAGCGTCGGCTACGGGCATCTGCAAGGTCGTTCCGCCTCCGGGATGGCGGCC
GCCCTTTGCCGTCAATGAGAAGAAATTCAAGTTCCGCACGCGGCTGCAACCGTTGAACTACATCGAGGTACATATATACATATGTCATGAGCACATGAAA
ATGCGGCGGTGGTTGGAGATACTCATGCTGCGACACTCGAATGTACAGGGCAACGCACGACAAGAATCTACATTTATGGAGAAGTTACGTCTCTTCCTCG
TACGTCCATGATGACACCACGACCAACAAGGATCGTTCATTCATACAAATGTTTCCCTAGTATCGCAATGGAACCCCCATGGAGCAGACACCAGTGCTGG
ACGGACTGGGCGCGAATCTCAGCACTTTGTACAAACTCGTGTGTGACATGGGCGGCTTTGATGTAGTGGAGAAAGCGTCTGCGTGGTCCCGCGTCGTGCA
GACCCTCAGCGAAGTGACAGACTTGGCGCCCGCGGCCCCCACCATCGACGACGACGTGCGCGCGCTGTATGCCACGTACTTGCTTCCCTTGGAATTGTTT
GAAGCGACCAAATCGACTAAAATCGAACCTACCAAAGCCGACCCCACGCCACTTCCACGTACGGACACTGGAACCCCCGACGCAACCAAACCATCCCTGC
CAGACCTGCTGGCGGCCCCCGTAAAACGAGGCCGCGGCCGTCCTCGAAAGGCAGACGCAGCAGTGCGCGCTATCGCTCCCCGTGTCCCCAGTACGCCCCC
CCCTCCTCCGACCACTGCCGACGGCGACTTGACGACCCCCACCGTCTTCCCCGGCTTCATCAAGCGAGGCCGCGGCCGACCTCGGAAAGCCGACAGCTTG
GCCATGCGACTGCTCGGCGCCGACGCCCAAGTGCCCGTGGACCCTACCCTGCTGGAAACGTCTGCGTTGGCAGTGGACCCCCTACGAACCTGTCGGCTGC
CTCCTCCGAGTGTGCGCGTGGGCCAAAAGTTCTACCGATGCATCGTCGCTGGCACGGCCGTGCTCGGGGAAGTGAAGCGCGTGCTGCCGGGAAAGAAACC
GATGGTGGTCGTGGAGTATCCAGGTACTATAACAATGTATGCACTGGAATACGCTAAGAAATCTTCGTGTACTTCGTCTATACAAGCAGTAATGTGCTTT
TTGCTGACATGTGGACGAATTGATTTGAGCCAATAAAGAAGATGCACGTTTTCCCTATACCATACGAAACGATGATTGGTTGAAATTTTTATCGTTCGTG
CATTTGGATTGGCTAAGACAGTTTCAAATACATTTGGTAGTAAATGCATTCGATGCTACTCAAAAGTCCAAAAAGTGAAACGGATATGACAATATATATA
TATATATAAATAACCATCGACTGCTTGCTTGTCCATATATATATATATATATATATATATATATTTATTCATTCCCTTGTGCATATGTACCTAGAGGGTG
TGCGAGACACGTTGTCGTATGGCACGATGCAACTGATTCTAGCCAACGGCAGCTCGAGGTACTGTGCTCGGTGATTTGCTTGGTTATGACTGAAGTGGCC
ATAGTGACTCGGCGCAGTTGGCGTTGAACAGTCGGATTTGCCAGTATTGTTTGCGAGGGGACTGCGATAGCCAGATGCTGCGCTGCAGCGGGTGCAGCGG
CGGGTATCACACGTTTTGCCTATCGCGTCCGATCGCTAGTGTGCCCCCGGGCGACTGGTACTGCGAGGTGTGCATTGCCGAGCAAGTGGCGCAGAAACCC
GAGAAATTCGGGTTTGAAACAGGCGCAGAACACACGCTCGCATCGTTCAAAGCCAAAGCGGACGCATGGCAGCTTGCGTACTTTGCGACGCCGCCGTCGG
TCCAGCAGCTCGAAGCCGAGTACTGGCGCGTGGTGACCAATCCCGACAAGAAGATCCAAGTGGAATACGGCAGCGATGTGGACACGGGGGCGATGGGCAG
CGGATTTCCGACGCTGTCGAAGGTCAATAAGCTCCGAAACCGCCTCGTCGACCGCTTCAACGCCGTGCACGAGTCGCCGCATCTGCTGGACCCGACAGAC
CTCGCGCTCAAGCGAGTGCTAGCCGAAGATTTGGACATGCAAACGGTGAATCAAGTGCACAAATACGCCACGAGTCCATGGAATTTGAATAATCTGCCCA
AACTCAACGGATCGATGCTCCAGTACTTGAACGAAGACATCAAAGGAGTGATGGTGCCGTGGATGTATGTTGGCATGTGCTTCTCCACGTTTTGCTGGCA
CGTCGAAGACCACAACTTTTACAGCATCTCGTACCTGCACCGCGGCGCCCCCAAGACGTGGTACGTTTATATATATATATATATATATATATATATATAT
TGACTACACCTATGTGTAGGTATGGCGTCCCTGGACACGCGGCGGCGAAGATGGAGTCGGTCATGCGCAAGTTGACGCCGGGTTTGTTTGGGTCCCAGCC
TGATCTGCACATGCAATTGGTGCGATATATATATATATATATATATATATTGCCTTTTTACCCACAAAAATGTTGGACTTTTGTGTGCGGATTCTTTGCC
AAATCTATCGATATATCGATTCGTTGTACTGACTTTAGTATGATAAAATCGTCCAGTGTGTCACACTAATTCAAGTCACTCAATTGTAAAGAAGAGTGGG
TTTGATTGGCTACTTATTATTTCAGTGATCTGGGTTTTGATTGGTCGTATATATCGATTGTCTGCCAATATATTTGGTTATTCTACTCCTCTTACACTCG
ATTGAGTGCAGCATCCAACCCCCACCTCCAATTTCGAATCGACTACTAGTCGAGTTGGTTACTAACTAGTCGAGTTGTTTACTGTGTCCAGGTGACAATG
TTTTCCCCCCAAACGCTGCAAAAGCATGGCGTGCCCGTGTACCGAGCGACGCACAACCCGAACGAGTTTATCATCACGTACCCGTCTTCATATCACGGCG
GGTTCAACAATGGGTTCAATCTGGCCGAAGCCGTCAACTTTGCCACGCCCGACTGGATCGCGTGGGGCCACACGGCCGTGCAAAACTACAAAAAGTAGAC
CATCACACGATCTGTGTATATATTGCTTGACTGATATATATATATATATATATATTTGGGTAGATTTTCGAAAGTCCCAGTGTTTTCCCATGATGCGTTG
CTCGTGACAGTCACGCTGGCGTCGCTCGAGGGCACGAACGCATTGGACTCGGACAGCGTCAGAAGCTACCTCTTGCCCAGCCTCAAAACGCGTACGTACA
TCCTACTCCTTGATTGATGGCATTTATATATATATATTGAACTAACCATTTATTTTGGTTTTCTAGTGCGGGACGAAACGGTAGCCTTCTGGGACGCTGT
GCGCCAGTATGGCATCACCAAGTCGGAAGCTATGGACGGGTACTTGGAATCGCATGGGCGGTCGACGTTTTCCCGCGCGTCGGCGCGGATCCGACTGGCG
ACGGCGGCCGACGAAGACGAGGACGACCCGCCGCCGCGTCCGTCGAAAATGATGCGCTCAGACAAGATGGGCGGCAAGATGATGGCGTCCAACTCGCGCG
CGGCGCGCCAAGTGCTATGGGCGGGCCGCTCGGGCAAACACGACGGGTTGCGGTGCTCGCAGTGCCAGCAGTACTGCTACGTGGCCGCGGTCGTGTGCTT
CAAGTGCCGGGCGATCGGGTGCGCTGACCATTTCAACTCGCAGTGCAAATGTGACGCCAAAGCGAACGGTATTTGGCTACACCATGTCGACACGACCGTG
CTGAGCCAGTACATCGACACCCTCGAACGCAAGTTCCAGGACGCGCAGGCGTGGGAGGCCCGTGTGGACGGCGCCGTGACCCTGGACGACCTGACGCTCG
CCGTCGCCCAAGGGGACCAGCTGATCGCCCAACACGTGGACGTGCCCATTCGCCGCCTTTATCAAGAAAAGCTGGTCATGCTAGCACTCCACAAATGGCA
AAGGCACGCCAAGCGGTGTCTCGAAACTGGCACGACGCTCAAAGAGCTCGACGAGTTGGCCCGCGAGGCCGCGTCGTTCAAGTACACGATGCCGCAAGTC
CACCAGATCTCGACGCTCATGGAAACCACCCGAACGTTGCAAGAGCAAGCGCAGTTGGTCGTCCACGAGATGAAGCTGTTGAAGGCCGACAACGAACAAG
GTGGCGATGCAGACGACGACGATGATGGGAATTCGATGGAAGCATTGCAACGAGAAGCCGCCGAATTCGACGTGTTTGCCCAAACCATCGAAACCCTCCT
GGCCAACCTCAGGCCCGTGACCATTCCAGAAACAGCCGCGCTGCAAACCGATTTGGCCTACGTCAACTGGCTGCGCGCCGCTAATGCCCTCGTCACGAAG
GCGATGGCCAACTCGTCGGCGGTGCTTTCGACCGCCACGACCCTCTACCCCACACTGGCCGACATTGACCTCGTTTGGAGCAGCTGCCCCGTCAAGACCG
TGCGGCTTCTCGACCGCGTAGCGCATTTGCGACAGGCGTGCATTGACGAAGGGCTCAAATGGCACGTAACGACTGCCAACAACCCAAAAAGTGTGGAGGA
GATGGAGCGGCTGCTGCAGCGCCTGGTGCGGTTGCCGGCGTTCCCCCAGGAAGTGGTGCACCTGTTGAGCAAGTGGAAACAAGCCAAGCTCTGGACCGAG
AAGGCGACCAAGGCGCTGGCGAAACCCAAACTCGGATGGACCGACGCTCTAGCGTTGGAAGCCCAAGCCGACTCGACTGACGTCCCCATGTCGTCGCTGC
TCCGGCGGCAGCTGCACGGACGCATCCAAGATGGCAACCGATGGATCGCCCGAACCAACAGCCTCTTCAAGTGGGAAGGCAGCGCCGTCCACTCTCTCCA
AGAGACGCTAGAGCGGAACGCCGTCGAGGACGAAATCACGTCATCCCTGATTTGCATCTGCGAACAAACGTATCACGAACACGTGCCAGTGTTGCGATGC
ACGGGGTGCACCACATTGTACGATTGATATATATATATTTATATATATATATATTATTGTCCTTTTACCCCAAAAAGTTGGACTTTAGTGTGCCTGTAAA
TGGATTCTTTGTACTGATTTTTGTATTATGGTAAAATCGTCTTCCAGTGTCACACTAATTCACGCCACACACGAATTTGATGTTGAATTGGTAAAAAAGA
GTGGTTGATTTGATTGGCTACTTGATTGTGATCTGGGTTTTGATTGGTCGTATATCGATTGTTTGCCGATTTGATTGAGAGCATTACCCCCCCACTCCAA
TTTCGAATCGACTTGACACTATACATATATATATATCGTATCGTATATATTACGTATCGTATATAGTTGTTTCCCTTTTGATGGTTACAATGATACTATG
TATTTGTATGTTGGGTAGATTTCACCGCCGCTGCATTGGGGATGTGGTGTCGACGTCATTTCTATGCAAAACGTGCTGCTCGTCGCGCCGTAAGCCGTAC
ACTGGCGGCGTAGTCGTCGACAATCCCACCGAGGCCGTGTACTGCTTGTGCCGCACGCCCGTGGACAACATTCCCATGATTTGCTGCGACTTCTGCGACG
AGTGGTGCGACTAACTAGTCGATTTGATCACCACTGGGGTTCACGTGTGTATCTTACATATATATATATATATATATATATATATATATGTAGGTACCAT
GCCAAGTGCATTGGGCTGTCGCCGGCCGTGTTGAGCTCTCTGGAAGCGTACAGGTGCAACGCATGTGCCATCCGCCAACACATCCCGCCCCGGCATCCCG
CGCGCCCGAACTGGAAGCAAGTTCGGGCGCACATTGCGCGCGGTGAGTCTCTCCAGATCCACGTGCCTGGGCTGGACGAGTTGAAGGCCCTCGTGGCCCA
CGGGCTCGACGTTATCGCAGATGTGACAGCGTTTGAACAGTCTTTTCTCGACCGGTGCGCGCTGGCCACGATTGCGCACCGCATGGACACATTGGCACAG
GAACTGGACGACAAAGTCGCCGCCGTCCGCCGCGTCGAGTCGCTCGTACTTCTCGACCCTGCCAAGCACAAGCTGCTTCCTCTGCAGTGGTTCTTGCACG
CGTGTCGCCTGATCTTTTGCTCGACGCCAGCCCCACGGTAGCCACCAACCCCCACGACCATCAAGATGAAAATGAAGTTTATGTATGTGATGCATATGTA
GGTATTCCCAGCTGGTGGTGTTGCTAAACGACGTGGCGCTCCACAAGCTCGAGTTTCCGACACCAGAACTGGACCGGTTTTACCGCGAGATTGAACGCAA
GCTGGCGCGGGCGGTGACGTGGGTGACCCAAGTCAAGACCATGAACATGAAGGCGCCCAGTTGCGATCTCGTCGCACTCCAAGCAGAGGCCGAAGAAATC
TCCCACTTCCTCGTGCTGCCAGACGCAGCCGTGTCCAATTTCAACCTCGCCCTCAAGTTTCACTACCAACGGTGATACAGAAGTATATATATATGTATAA
CAAACACGTGCTATTTACCTCTTCAA