Transcript Name :
Plaha_PHALS_12045
Location :
scaffold_1 : 32707 - 35218
Orientation:
(+)
Number of Exons:
1
Description :
Rab6 GTPase activator GAPCenA and related TBC domain proteins
This protein is Not Signal Peptide
This protein has transmembrane domain
Not Reviewed
Run NCBI BLAST with nr Database
Analysis
Gene Model plot
Functional Annotation
HMMPFAM Prediction
*** None ***
SUPER FAMILY Prediction
*** None ***
FPRINTSCAN Prediction
*** None ***
PROFILESCAN Prediction
Profile scan predictionP-Valprediction_id
Rab-GTPase-TBC domain28.741PS50086
HMMSMART Prediction
HmmSmart predictionP-Valprediction_id
Rab-GTPase-TBC domain4.9SM00164
HMMTigr Prediction
*** None ***
HMMPanther Prediction
*** None ***
Gene3D Prediction
*** None ***
InterPro
*** None ***
Signalp -- Signal Peptide cleavage Site
*** None ***
tmhmm -- Prediction of transmembrane helices in Proteins
InsideOutsideTMhelix
1-621
SECRETOME -- Non-signal Peptide Protein Secretion
*** None ***
PROP -- Proprotein Convertase Prediction using PROP
*** None ***
PSORT -- Prediction of sub-cellular localization
*** None ***
GO
*** None ***
Pathway
*** None ***
Ortholog
*** None ***
Sequence
        2512 bases(100 bases per row)
ATGACGTCGACGGCGGATACTGTTCATGCGCTGTTTGCGGAGGCTGTGGCGGTCATTGTTCGTCGTGGGTGGATTCAGGTGATTTTCTGATGATAGGATT
TGTCTTTTATTCTTTATTGACTCTTGTGGGTATTTGGACGTGTAGACTGACACTGTGGAGGCTATCGCGGCGGTCGACAAGAGTCTAAGATCGCTTGTGG
AGCGTCAGAAACTCCGACGATTAGCTGTTTGGATCTCAGGATTTCCTGATGCGTCGAGATTTCGGTATGTAGTAATCAAAACTTCAAAGCTGGCAGATCG
CCTGACCTGTCAACGTTTTGTTCAAGCTATTGGCTGCAAGCTGGAGATGTAGCGACGCTAATCAAGGATATTCCAAAAGGAATGAGCAGTCGAGACTTCT
ATTTACGGGTATTGGTTGCATTAAACATTGCGAGATGTGTAATCGGGTGACTGATTGAGGGATGTAGAAGGCGGACATAAAAAAACTGGAAGATAGGGCG
ATACTTAAAGCCACAGGAGTAGAAGGTGAAATCGACCGCGACATTGAGCGCACATTTCCTAATGATCGTTTTTTCTCGGATGATGGTAATAAAGGCTGAC
TTATATTACggtgacgtgcggcactgaCTTAGTTATTGTATTAGGTGACGGTAAACGTTTGCTTGGAAATGTACTAAAAGCCGTTGCGCTTTATGCTGAT
GACGTTGGGTATTGCCAAGTATGGACAATCGGTTCTAAGTCATCTACTTGGTGATATAAAATCTGATGATACAATTACCGTGACAGGGGATGAATTATGT
TGTCGCTTCTTTGCTGCTTGTGATGAAAGACGCTGAAAATACTATGGCGCTTAATCTTGACAATTTCTCTATGCAAGAGGTCGCATTTTGGCTAACACTT
GCTTTGATTCGACGCAAAGGGATGGACGAGTTGTGGAAGCATAAGATGCCAGGGTTAGCCTTCTTCATACAGTGTTTGTTAAGACTTGGTTGCTGATATT
AAATGATCACTTTGATGGTGCGTATAGGCTCTCGCGATGTATTTTTCTCTTCCAGCAACTTTTAAAGCAGCACTTCTATGATCTATCTGCCCACTTTCGA
CAAATTGGAATGCACTCCAGCATCATGGTCACTCAGGTGATTGCGTCAGCACTTATCGTATCTAGAGCTAAGCATTCAAATTCGATTTGATTGTATTTTT
CGATAGTGGTTTGTTACAGTGTTTGCTCGAGTTCTTGACACTCAAACACTTGTTCGAGTTTGGGATCTAGTCTTTATGGATGGATGGAAAGCTGTATATC
GAGTAGCTCTCGCCCTTATTGCAAGGTTACGACCAACGCTTCTTGCCATGGTAAGGACCCTCTTTGATGTTGATAAAGTTGGCAGTGTTGTGCGTAGTAA
TTTCTTATTGTTGTTCATTTGAAAGGACCTTGAGCAGTGCAGTGAGTTCTTACGATGGAATCCCAAACTAGGACTAGAAACAGTCCTAAGCCCTAGTATT
TTTCTTGAACATGCGCTGAGCTACAAAGTGACTCGCTTCAGTTTGAAACAATTGGAGGAAGAGCGACATCTTGAGGTGAGAAATAATACAAAACTCTGCA
AAAGTATTCACTTACTTTGGCACGTAGTATCTTCGTCTCCGTTTGCAGCAAACGCCATTATCAGAGGAGCATCGCTTGCTCTTCCCAACACTTCAACAGG
ATGGTGACATCAGTGCTAAAAAGAAAGCTCTTGAACTCATTCGCTCAAAGCTTGAGCGCTATGACACAGATGTTGCAAGTGATACTATagttcttcaaaa
caaaatCGAAGCCGCCGAGAAAGCACATGCCTCGACTATGTCAGTTTGCTACGCCATTGCTTACGAGTTGTCCGAGTCTACGATTGAACTAAAAGAGCGA
ATTGAGATAAAAAGGCGTCTACGCGCCAAATTTCGTTCGCGATTGAATACCGCAATTAATGAAGCGACCACATCATCCTCTGCAAACGCTTCAGCGCCGA
GATTTACGATGTGGGGAAATCCGTTTGAGTTTCTTAACGAACGCATGGCAAGTTGTTTGGATCGCTTGCCTCTTGTTTCAAAATGGTTGGACACTGAACA
CGAGCTTCATGTTGCTAATATTGAAACTGATATCGAAAATGATGAGGAGACACAACGAACATTACGGCACCTCGAGATGTTGGTGCCACACTTAACAGCC
GAACTGCGTTTATTGCAACGCTCAATTGCTTACAACGAGCGCTTCCTGCAGCCCTTGTTACAACGAACACGGCTTCTCCAACGTGACGCCGAGCTGGCAC
GCATTGAAGTGGAAGAAGCGCAGGTTTTCAAGGATCGATTAGCCGATCAATTGCTGCAAATCATGCTGACGAGCGAAAAGCTTAAGAACAAACGAATGCA
GCAGTTATTCGCAGAGGTTGACCAGAACGGCAGCATGAGTACGTAAAGAAAAAGATTGAGGGTATCTACTGTATTAACTACCGGTGCGGAAGCTTCAGAG
TCAAAGACATGA